FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane2_Index5_2.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 20800647 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 4349360 | 2.6089141 | 5.4404087 | 1 |
| CCTGG | 4327985 | 2.5819216 | 6.2586336 | 1 |
| CTTCT | 4574195 | 2.5148563 | 5.6333556 | 1 |
| CTGGA | 4195760 | 2.464382 | 8.906165 | 1 |
| TCCAG | 4122550 | 2.373947 | 5.85434 | 2 |
| CTGCT | 4073645 | 2.3329804 | 5.1752706 | 1 |
| CTCCT | 4092650 | 2.297948 | 7.7422256 | 1 |
| CTGGG | 3765055 | 2.2909784 | 8.727061 | 1 |
| CAGGA | 3795950 | 2.2417905 | 5.547019 | 1 |
| CCCAG | 3737380 | 2.1979074 | 7.4998045 | 1 |
| CTTCA | 3957480 | 2.1877334 | 5.8196106 | 1 |
| CTCCA | 3871015 | 2.1854334 | 8.274504 | 1 |
| CAGAA | 3716680 | 2.1187391 | 5.0018067 | 1 |
| CTCTG | 3605720 | 2.0649993 | 6.4861183 | 1 |
| CTGCA | 3472915 | 1.9998581 | 5.0088606 | 1 |
| CTGGC | 3150480 | 1.879464 | 5.4945264 | 1 |
| TGGAA | 3240040 | 1.8736475 | 5.1409674 | 2 |
| CTGAA | 3286395 | 1.8632236 | 5.5726466 | 1 |
| CTCAG | 3052500 | 1.7577646 | 6.2102623 | 1 |
| CTTTG | 3042545 | 1.706192 | 5.084444 | 1 |
| CTGGT | 2860135 | 1.670732 | 5.1324143 | 1 |
| CTTGG | 2803560 | 1.6376839 | 5.4304852 | 1 |
| CTCCC | 2733555 | 1.5674742 | 5.1842365 | 1 |